IL_9GHA_160

3D structure

PDB id

9GHA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Fusidic acid-locked Escherichia coli 70S ribosome with Staphylococcus aureus EF-G and a tRNA in pe/E chimeric state (CHI)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.24 Å

Loop

Sequence

CUGAG*CGAGAUGAG

Length

14 nucleotides

Bulged bases

9GHA|1|a|G|2780

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9GHA_160 not in the Motif Atlas

Homologous match to IL_5J7L_345

Geometric discrepancy: 0.0629

The information below is about IL_5J7L_345

Detailed Annotation

tSH-tHS-tHW

Broad Annotation

tSH-tHS-tHW

Motif group

IL_04638.3

Basepair signature

cWW-tSH-tHW-tHS-cSH-cWW-L

Number of instances in this motif group

5

Unit IDs

9GHA|1|a|C|2636
9GHA|1|a|U|2637
9GHA|1|a|G|2638
9GHA|1|a|A|2639
9GHA|1|a|G|2640
*
9GHA|1|a|C|2774
9GHA|1|a|G|2775
9GHA|1|a|A|2776
9GHA|1|a|G|2777
9GHA|1|a|A|2778
9GHA|1|a|U|2779
9GHA|1|a|G|2780
9GHA|1|a|A|2781
9GHA|1|a|G|2782

Current chains

Chain a

23S rRNA

Nearby chains

Chain d

50S ribosomal protein L3

Chain i

50S ribosomal protein L13