IL_9GHB_103

3D structure

PDB id

9GHB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Fusidic acid-locked Escherichia coli 70S ribosome with Staphylococcus aureus EF-G in post-translocational state (POST)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.21 Å

Loop

Sequence

GUUG*CAUC

Length

8 nucleotides

Bulged bases

9GHB|1|a|U|1061

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9GHB_103 not in the Motif Atlas

Homologous match to IL_6PRV_001

Geometric discrepancy: 0.2883

The information below is about IL_6PRV_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28482.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

4

Unit IDs

9GHB|1|a|G|1059
9GHB|1|a|U|1060
9GHB|1|a|U|1061
9GHB|1|a|G|1062
*
9GHB|1|a|C|1076
9GHB|1|a|A|1077
9GHB|1|a|U|1078
9GHB|1|a|C|1079

Current chains

Chain a

23S rRNA

Nearby chains