IL_9GHD_133

3D structure

PDB id

9GHD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli 70S ribosome in complex with Staphylococcus aureus FusB-EF-G (FusB-EF-G-70S*)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.41 Å

Loop

Sequence

UGCAAAC*GGACGUAUA

Length

16 nucleotides

Bulged bases

9GHD|1|a|A|1801, 9GHD|1|a|C|1816, 9GHD|1|a|U|1820

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9GHD_133 not in the Motif Atlas

Homologous match to IL_5J7L_313

Geometric discrepancy: 0.0423

The information below is about IL_5J7L_313

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.5

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

9GHD|1|a|U|1798
9GHD|1|a|G|1799
9GHD|1|a|C|1800
9GHD|1|a|A|1801
9GHD|1|a|A|1802
9GHD|1|a|A|1803
9GHD|1|a|C|1804
*
9GHD|1|a|G|1813
9GHD|1|a|G|1814
9GHD|1|a|A|1815
9GHD|1|a|C|1816
9GHD|1|a|G|1817
9GHD|1|a|U|1818
9GHD|1|a|A|1819
9GHD|1|a|U|1820
9GHD|1|a|A|1821

Current chains

Chain a

23S rRNA

Nearby chains

Chain A

Small subunit ribosomal RNA; SSU rRNA

Chain c

50S ribosomal protein L2