IL_9GHD_161

3D structure

PDB id

9GHD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli 70S ribosome in complex with Staphylococcus aureus FusB-EF-G (FusB-EF-G-70S*)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.41 Å

Loop

Sequence

CUGAG*CGAGAUGAG

Length

14 nucleotides

Bulged bases

9GHD|1|a|G|2780

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9GHD_161 not in the Motif Atlas

Homologous match to IL_5J7L_345

Geometric discrepancy: 0.0644

The information below is about IL_5J7L_345

Detailed Annotation

tSH-tHS-tHW

Broad Annotation

tSH-tHS-tHW

Motif group

IL_04638.3

Basepair signature

cWW-tSH-tHW-tHS-cSH-cWW-L

Number of instances in this motif group

5

Unit IDs

9GHD|1|a|C|2636
9GHD|1|a|U|2637
9GHD|1|a|G|2638
9GHD|1|a|A|2639
9GHD|1|a|G|2640
*
9GHD|1|a|C|2774
9GHD|1|a|G|2775
9GHD|1|a|A|2776
9GHD|1|a|G|2777
9GHD|1|a|A|2778
9GHD|1|a|U|2779
9GHD|1|a|G|2780
9GHD|1|a|A|2781
9GHD|1|a|G|2782

Current chains

Chain a

23S rRNA

Nearby chains

Chain d

50S ribosomal protein L3

Chain i

50S ribosomal protein L13