IL_9GHE_056

3D structure

PDB id

9GHE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus FusB bound to the small subunit of the Escherichia coli 70S ribosome (FusB-70S:SSU)

Experimental method

ELECTRON MICROSCOPY

Resolution

1.87 Å

Loop

Sequence

CGGAUU*AUGAAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9GHE_056 not in the Motif Atlas

Homologous match to IL_4LFB_055

Geometric discrepancy: 0.0911

The information below is about IL_4LFB_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_57885.2

Basepair signature

cWW-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

7

Unit IDs

9GHE|1|A|C|1303
9GHE|1|A|G|1304
9GHE|1|A|G|1305
9GHE|1|A|A|1306
9GHE|1|A|U|1307
9GHE|1|A|U|1308
*
9GHE|1|A|A|1329
9GHE|1|A|U|1330
9GHE|1|A|G|1331
9GHE|1|A|A|1332
9GHE|1|A|A|1333
9GHE|1|A|G|1334

Current chains

Chain A

16S rRNA

Nearby chains

Chain M

30S ribosomal protein S13