IL_9GHE_162

3D structure

PDB id

9GHE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus FusB bound to the small subunit of the Escherichia coli 70S ribosome (FusB-70S:SSU)

Experimental method

ELECTRON MICROSCOPY

Resolution

1.87 Å

Loop

Sequence

CUGAG*CGAGAUGAG

Length

14 nucleotides

Bulged bases

9GHE|1|a|G|2780

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9GHE_162 not in the Motif Atlas

Homologous match to IL_5J7L_345

Geometric discrepancy: 0.053

The information below is about IL_5J7L_345

Detailed Annotation

tSH-tHS-tHW

Broad Annotation

tSH-tHS-tHW

Motif group

IL_04638.3

Basepair signature

cWW-tSH-tHW-tHS-cSH-cWW-L

Number of instances in this motif group

5

Unit IDs

9GHE|1|a|C|2636
9GHE|1|a|U|2637
9GHE|1|a|G|2638
9GHE|1|a|A|2639
9GHE|1|a|G|2640
*
9GHE|1|a|C|2774
9GHE|1|a|G|2775
9GHE|1|a|A|2776
9GHE|1|a|G|2777
9GHE|1|a|A|2778
9GHE|1|a|U|2779
9GHE|1|a|G|2780
9GHE|1|a|A|2781
9GHE|1|a|G|2782

Current chains

Chain a

23S rRNA

Nearby chains

Chain d

50S ribosomal protein L3

Chain i

50S ribosomal protein L13