IL_9GHF_030

3D structure

PDB id

9GHF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus FusB bound to the large subunit of the Escherichia coli 70S ribosome (FusB-70S:LSU)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

UGAAAUCC*GAACUG

Length

14 nucleotides

Bulged bases

9GHF|1|A|U|632

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9GHF_030 not in the Motif Atlas

Homologous match to IL_5J7L_030

Geometric discrepancy: 0.0791

The information below is about IL_5J7L_030

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_78349.3

Basepair signature

cWW-L-R-L-R-L-R-L-cWW-L-L

Number of instances in this motif group

2

Unit IDs

9GHF|1|A|U|605
9GHF|1|A|G|606
9GHF|1|A|A|607
9GHF|1|A|A|608
9GHF|1|A|A|609
9GHF|1|A|U|610
9GHF|1|A|C|611
9GHF|1|A|C|612
*
9GHF|1|A|G|628
9GHF|1|A|A|629
9GHF|1|A|A|630
9GHF|1|A|C|631
9GHF|1|A|U|632
9GHF|1|A|G|633

Current chains

Chain A

16S rRNA

Nearby chains

Chain D

30S ribosomal protein S4

Chain H

30S ribosomal protein S8

Chain P

30S ribosomal protein S16

Chain Q

30S ribosomal protein S17