IL_9GHF_035

3D structure

PDB id

9GHF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus FusB bound to the large subunit of the Escherichia coli 70S ribosome (FusB-70S:LSU)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

UGUAG*CGUAGAGA

Length

13 nucleotides

Bulged bases

9GHF|1|A|A|702

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9GHF_035 not in the Motif Atlas

Homologous match to IL_5J7L_035

Geometric discrepancy: 0.0728

The information below is about IL_5J7L_035

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_01488.3

Basepair signature

cWW-tSS-tSH-L-R-tHS-L-cWW

Number of instances in this motif group

10

Unit IDs

9GHF|1|A|U|684
9GHF|1|A|G|685
9GHF|1|A|U|686
9GHF|1|A|A|687
9GHF|1|A|G|688
*
9GHF|1|A|C|699
9GHF|1|A|G|700
9GHF|1|A|U|701
9GHF|1|A|A|702
9GHF|1|A|G|703
9GHF|1|A|A|704
9GHF|1|A|G|705
9GHF|1|A|A|706

Current chains

Chain A

16S rRNA

Nearby chains

Chain K

Small ribosomal subunit protein uS11

Chain a

Large subunit ribosomal RNA; LSU rRNA