IL_9GHF_056

3D structure

PDB id

9GHF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus FusB bound to the large subunit of the Escherichia coli 70S ribosome (FusB-70S:LSU)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

CGGAUU*AUGAAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9GHF_056 not in the Motif Atlas

Homologous match to IL_4LFB_055

Geometric discrepancy: 0.0923

The information below is about IL_4LFB_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_85536.2

Basepair signature

cWW-tSH-L-R-tHS-cWW-cWW

Number of instances in this motif group

8

Unit IDs

9GHF|1|A|C|1303
9GHF|1|A|G|1304
9GHF|1|A|G|1305
9GHF|1|A|A|1306
9GHF|1|A|U|1307
9GHF|1|A|U|1308
*
9GHF|1|A|A|1329
9GHF|1|A|U|1330
9GHF|1|A|G|1331
9GHF|1|A|A|1332
9GHF|1|A|A|1333
9GHF|1|A|G|1334

Current chains

Chain A

16S rRNA

Nearby chains

Chain M

30S ribosomal protein S13