3D structure

PDB id
9GHF (explore in PDB, NAKB, or RNA 3D Hub)
Description
Staphylococcus aureus FusB bound to the large subunit of the Escherichia coli 70S ribosome (FusB-70S:LSU)
Experimental method
ELECTRON MICROSCOPY
Resolution
2.4 Å

Loop

Sequence
CCA*UG
Length
5 nucleotides
Bulged bases
9GHF|1|a|C|995
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_9GHF_095 not in the Motif Atlas
Homologous match to IL_5J7L_276
Geometric discrepancy: 0.0485
The information below is about IL_5J7L_276
Detailed Annotation
Single bulged C
Broad Annotation
No text annotation
Motif group
IL_61258.15
Basepair signature
cWW-L-cWW
Number of instances in this motif group
41

Unit IDs

9GHF|1|a|C|994
9GHF|1|a|C|995
9GHF|1|a|A|996
*
9GHF|1|a|U|1159
9GHF|1|a|G|1160

Current chains

Chain a
23S rRNA

Nearby chains

Chain i
50S ribosomal protein L13
Chain p
50S ribosomal protein L20
Chain q
50S ribosomal protein L21
Chain y
50S ribosomal protein L30

Coloring options:


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