IL_9GHF_104

3D structure

PDB id

9GHF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus FusB bound to the large subunit of the Escherichia coli 70S ribosome (FusB-70S:LSU)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

GUUG*CAUC

Length

8 nucleotides

Bulged bases

9GHF|1|a|U|1061

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9GHF_104 not in the Motif Atlas

Homologous match to IL_6PRV_001

Geometric discrepancy: 0.3203

The information below is about IL_6PRV_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_92446.2

Basepair signature

cWW-cWW-R-L-L

Number of instances in this motif group

5

Unit IDs

9GHF|1|a|G|1059
9GHF|1|a|U|1060
9GHF|1|a|U|1061
9GHF|1|a|G|1062
*
9GHF|1|a|C|1076
9GHF|1|a|A|1077
9GHF|1|a|U|1078
9GHF|1|a|C|1079

Current chains

Chain a

23S rRNA

Nearby chains