IL_9GHF_161

3D structure

PDB id

9GHF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus FusB bound to the large subunit of the Escherichia coli 70S ribosome (FusB-70S:LSU)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

CUGAG*CGAGAUGAG

Length

14 nucleotides

Bulged bases

9GHF|1|a|G|2780

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9GHF_161 not in the Motif Atlas

Homologous match to IL_5J7L_345

Geometric discrepancy: 0.0664

The information below is about IL_5J7L_345

Detailed Annotation

tSH-tHS-tHW

Broad Annotation

tSH-tHS-tHW

Motif group

IL_04638.3

Basepair signature

cWW-tSH-tHW-tHS-cSH-cWW-L

Number of instances in this motif group

5

Unit IDs

9GHF|1|a|C|2636
9GHF|1|a|U|2637
9GHF|1|a|G|2638
9GHF|1|a|A|2639
9GHF|1|a|G|2640
*
9GHF|1|a|C|2774
9GHF|1|a|G|2775
9GHF|1|a|A|2776
9GHF|1|a|G|2777
9GHF|1|a|A|2778
9GHF|1|a|U|2779
9GHF|1|a|G|2780
9GHF|1|a|A|2781
9GHF|1|a|G|2782

Current chains

Chain a

23S rRNA

Nearby chains

Chain d

50S ribosomal protein L3

Chain i

50S ribosomal protein L13