IL_9GHG_043

3D structure

PDB id

9GHG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus FusB bound to the small subunit of the S. aureus 70S ribosome (FusB-Sa70S:SSU)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.22 Å

Loop

Sequence

GUUG*CAUC

Length

8 nucleotides

Bulged bases

9GHG|1|A|U|1105

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9GHG_043 not in the Motif Atlas

Homologous match to IL_6PRV_001

Geometric discrepancy: 0.2214

The information below is about IL_6PRV_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_28482.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

4

Unit IDs

9GHG|1|A|G|1103
9GHG|1|A|U|1104
9GHG|1|A|U|1105
9GHG|1|A|G|1106
*
9GHG|1|A|C|1120
9GHG|1|A|A|1121
9GHG|1|A|U|1122
9GHG|1|A|C|1123

Current chains

Chain A

23S rRNA

Nearby chains