IL_9GHG_071

3D structure

PDB id

9GHG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus FusB bound to the small subunit of the S. aureus 70S ribosome (FusB-Sa70S:SSU)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.22 Å

Loop

Sequence

UGCUAAA*UGAUGUAUA

Length

16 nucleotides

Bulged bases

9GHG|1|A|U|1828, 9GHG|1|A|U|1843, 9GHG|1|A|U|1847

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9GHG_071 not in the Motif Atlas

Homologous match to IL_5J7L_313

Geometric discrepancy: 0.0953

The information below is about IL_5J7L_313

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.5

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

9GHG|1|A|U|1825
9GHG|1|A|G|1826
9GHG|1|A|C|1827
9GHG|1|A|U|1828
9GHG|1|A|A|1829
9GHG|1|A|A|1830
9GHG|1|A|A|1831
*
9GHG|1|A|U|1840
9GHG|1|A|G|1841
9GHG|1|A|A|1842
9GHG|1|A|U|1843
9GHG|1|A|G|1844
9GHG|1|A|U|1845
9GHG|1|A|A|1846
9GHG|1|A|U|1847
9GHG|1|A|A|1848

Current chains

Chain A

23S rRNA

Nearby chains

Chain G

50S ribosomal protein L2

Chain a

Small subunit ribosomal RNA; SSU rRNA