IL_9GHG_143

3D structure

PDB id

9GHG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus FusB bound to the small subunit of the S. aureus 70S ribosome (FusB-Sa70S:SSU)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.22 Å

Loop

Sequence

GUG*UAAC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9GHG_143 not in the Motif Atlas

Geometric match to IL_8C3A_405

Geometric discrepancy: 0.2583

The information below is about IL_8C3A_405

Detailed Annotation

Major groove platform with extra cWW

Broad Annotation

No text annotation

Motif group

IL_51387.1

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

15

Unit IDs

9GHG|1|a|G|664
9GHG|1|a|U|665
9GHG|1|a|G|666
*
9GHG|1|a|U|755
9GHG|1|a|A|756
9GHG|1|a|A|757
9GHG|1|a|C|758

Current chains

Chain a

23S rRNA

Nearby chains

Chain p

30S ribosomal protein S15