IL_9GHG_175

3D structure

PDB id

9GHG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus FusB bound to the small subunit of the S. aureus 70S ribosome (FusB-Sa70S:SSU)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.22 Å

Loop

Sequence

CCGAAG*CGAAG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9GHG_175 not in the Motif Atlas

Homologous match to IL_5J7L_063

Geometric discrepancy: 0.1821

The information below is about IL_5J7L_063

Detailed Annotation

Triple sheared related

Broad Annotation

Triple sheared

Motif group

IL_80231.1

Basepair signature

cWW-L-R-L-R-L-R-tHS-cWW

Number of instances in this motif group

2

Unit IDs

9GHG|1|a|C|1440
9GHG|1|a|C|1441
9GHG|1|a|G|1442
9GHG|1|a|A|1443
9GHG|1|a|A|1444
9GHG|1|a|G|1445
*
9GHG|1|a|C|1477
9GHG|1|a|G|1478
9GHG|1|a|A|1479
9GHG|1|a|A|1480
9GHG|1|a|G|1481

Current chains

Chain a

23S rRNA

Nearby chains

Chain A

Large subunit ribosomal RNA; LSU rRNA

Chain S

50S ribosomal protein L19

Chain u

30S ribosomal protein S20