IL_9GHH_020

3D structure

PDB id

9GHH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus FusB bound to the large subunit of the S. aureus 70S ribosome (FusB-Sa70S:LSU)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GAAAC*GAGAUAGC

Length

13 nucleotides

Bulged bases

9GHH|1|A|G|846, 9GHH|1|A|G|850

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9GHH_020 not in the Motif Atlas

Homologous match to IL_5J7L_260

Geometric discrepancy: 0.0628

The information below is about IL_5J7L_260

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_54041.2

Basepair signature

cWW-L-R-L-R-tWH-L-cWW

Number of instances in this motif group

7

Unit IDs

9GHH|1|A|G|719
9GHH|1|A|A|720
9GHH|1|A|A|721
9GHH|1|A|A|722
9GHH|1|A|C|723
*
9GHH|1|A|G|844
9GHH|1|A|A|845
9GHH|1|A|G|846
9GHH|1|A|A|847
9GHH|1|A|U|848
9GHH|1|A|A|849
9GHH|1|A|G|850
9GHH|1|A|C|851

Current chains

Chain A

23S rRNA

Nearby chains

Chain I

50S ribosomal protein L4

Chain O

50S ribosomal protein L15