IL_9GHH_029
3D structure
- PDB id
- 9GHH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Staphylococcus aureus FusB bound to the large subunit of the S. aureus 70S ribosome (FusB-Sa70S:LSU)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- GAGGUAG*CGAAUGC
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9GHH_029 not in the Motif Atlas
- Homologous match to IL_4WF9_031
- Geometric discrepancy: 0.0719
- The information below is about IL_4WF9_031
- Detailed Annotation
- 7x7 Sarcin-Ricin with intercalated A; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_29198.2
- Basepair signature
- cWW-cWW-L-R-cSH-R-tWH-tHS-cWW
- Number of instances in this motif group
- 4
Unit IDs
9GHH|1|A|G|901
9GHH|1|A|A|902
9GHH|1|A|G|903
9GHH|1|A|G|904
9GHH|1|A|U|905
9GHH|1|A|A|906
9GHH|1|A|G|907
*
9GHH|1|A|C|960
9GHH|1|A|G|961
9GHH|1|A|A|962
9GHH|1|A|A|963
9GHH|1|A|U|964
9GHH|1|A|G|965
9GHH|1|A|C|966
Current chains
- Chain A
- 23S rRNA
Nearby chains
- Chain 3
- 50S ribosomal protein L30
- Chain B
- 5S ribosomal RNA; 5S rRNA
- Chain P
- 50S ribosomal protein L16
- Chain Z
- 50S ribosomal protein L27
Coloring options: