IL_9GHH_041

3D structure

PDB id

9GHH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus FusB bound to the large subunit of the S. aureus 70S ribosome (FusB-Sa70S:LSU)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GCG*CAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9GHH_041 not in the Motif Atlas

Homologous match to IL_4WF9_042

Geometric discrepancy: 0.095

The information below is about IL_4WF9_042

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

179

Unit IDs

9GHH|1|A|G|1081
9GHH|1|A|C|1082
9GHH|1|A|G|1083
*
9GHH|1|A|C|1160
9GHH|1|A|A|1161
9GHH|1|A|C|1162

Current chains

Chain A

23S rRNA

Nearby chains

Chain P

50S ribosomal protein L16

Chain Y

50S ribosomal protein L25