3D structure

PDB id
9GHH (explore in PDB, NAKB, or RNA 3D Hub)
Description
Staphylococcus aureus FusB bound to the large subunit of the S. aureus 70S ribosome (FusB-Sa70S:LSU)
Experimental method
ELECTRON MICROSCOPY
Resolution
2.7 Å

Loop

Sequence
CCCAGACAA*UCGAG
Length
14 nucleotides
Bulged bases
9GHH|1|A|A|1090
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_9GHH_042 not in the Motif Atlas
Homologous match to IL_5J7L_284
Geometric discrepancy: 0.1856
The information below is about IL_5J7L_284
Detailed Annotation
Kink-turn
Broad Annotation
No text annotation
Motif group
IL_99692.2
Basepair signature
cWW-tSS-tSH-L-R-R-L-cWW-L-L
Number of instances in this motif group
6

Unit IDs

9GHH|1|A|C|1087
9GHH|1|A|C|1088
9GHH|1|A|C|1089
9GHH|1|A|A|1090
9GHH|1|A|G|1091
9GHH|1|A|A|1092
9GHH|1|A|C|1093
9GHH|1|A|A|1094
9GHH|1|A|A|1095
*
9GHH|1|A|U|1152
9GHH|1|A|C|1153
9GHH|1|A|G|1154
9GHH|1|A|A|1155
9GHH|1|A|G|1156

Current chains

Chain A
23S rRNA

Nearby chains

Chain K
50S ribosomal protein L6

Coloring options:


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