IL_9GHH_047

3D structure

PDB id

9GHH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus FusB bound to the large subunit of the S. aureus 70S ribosome (FusB-Sa70S:LSU)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CGUUGAAG*UGGAG

Length

13 nucleotides

Bulged bases

9GHH|1|A|U|1249

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9GHH_047 not in the Motif Atlas

Homologous match to IL_5J7L_288

Geometric discrepancy: 0.0818

The information below is about IL_5J7L_288

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_70923.9

Basepair signature

cWW-tSS-tSH-L-tHS-tHS-cWW

Number of instances in this motif group

27

Unit IDs

9GHH|1|A|C|1246
9GHH|1|A|G|1247
9GHH|1|A|U|1248
9GHH|1|A|U|1249
9GHH|1|A|G|1250
9GHH|1|A|A|1251
9GHH|1|A|A|1252
9GHH|1|A|G|1253
*
9GHH|1|A|U|1272
9GHH|1|A|G|1273
9GHH|1|A|G|1274
9GHH|1|A|A|1275
9GHH|1|A|G|1276

Current chains

Chain A

23S rRNA

Nearby chains

Chain T

50S ribosomal protein L20