IL_9GHH_056

3D structure

PDB id

9GHH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus FusB bound to the large subunit of the S. aureus 70S ribosome (FusB-Sa70S:LSU)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CGAUG*CUAG

Length

9 nucleotides

Bulged bases

9GHH|1|A|U|1464

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9GHH_056 not in the Motif Atlas

Homologous match to IL_4WF9_054

Geometric discrepancy: 0.2726

The information below is about IL_4WF9_054

Detailed Annotation

Other IL

Broad Annotation

Other IL

Motif group

IL_99646.2

Basepair signature

cWW-tWH-tHS-cWW

Number of instances in this motif group

6

Unit IDs

9GHH|1|A|C|1461
9GHH|1|A|G|1462
9GHH|1|A|A|1463
9GHH|1|A|U|1464
9GHH|1|A|G|1465
*
9GHH|1|A|C|1624
9GHH|1|A|U|1625
9GHH|1|A|A|1626
9GHH|1|A|G|1627

Current chains

Chain A

23S rRNA

Nearby chains