IL_9GHH_059

3D structure

PDB id

9GHH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus FusB bound to the large subunit of the S. aureus 70S ribosome (FusB-Sa70S:LSU)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

UAAG*UGAUG

Length

9 nucleotides

Bulged bases

9GHH|1|A|U|1568

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9GHH_059 not in the Motif Atlas

Homologous match to IL_5J7L_299

Geometric discrepancy: 0.2503

The information below is about IL_5J7L_299

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_68574.4

Basepair signature

cWW-tHH-tHS-cWW

Number of instances in this motif group

3

Unit IDs

9GHH|1|A|U|1512
9GHH|1|A|A|1513
9GHH|1|A|A|1514
9GHH|1|A|G|1515
*
9GHH|1|A|U|1565
9GHH|1|A|G|1566
9GHH|1|A|A|1567
9GHH|1|A|U|1568
9GHH|1|A|G|1569

Current chains

Chain A

23S rRNA

Nearby chains