IL_9GHH_135
3D structure
- PDB id
- 9GHH (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Staphylococcus aureus FusB bound to the large subunit of the S. aureus 70S ribosome (FusB-Sa70S:LSU)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.7 Å
Loop
- Sequence
- GUGCCAG*CGGUAAUAC
- Length
- 16 nucleotides
- Bulged bases
- 9GHH|1|a|A|540, 9GHH|1|a|U|542, 9GHH|1|a|A|543
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9GHH_135 not in the Motif Atlas
- Homologous match to IL_4LFB_021
- Geometric discrepancy: 0.1955
- The information below is about IL_4LFB_021
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_52042.2
- Basepair signature
- cWW-cSW-tWH-L-R-L-R-tHS-cWW
- Number of instances in this motif group
- 6
Unit IDs
9GHH|1|a|G|523
9GHH|1|a|U|524
9GHH|1|a|G|525
9GHH|1|a|C|526
9GHH|1|a|C|527
9GHH|1|a|A|528
9GHH|1|a|G|529
*
9GHH|1|a|C|536
9GHH|1|a|G|537
9GHH|1|a|G|538
9GHH|1|a|U|539
9GHH|1|a|A|540
9GHH|1|a|A|541
9GHH|1|a|U|542
9GHH|1|a|A|543
9GHH|1|a|C|544
Current chains
- Chain a
- 16S rRNA
Nearby chains
- Chain b
- mRNA
- Chain d
- 30S ribosomal protein S3
- Chain e
- 30S ribosomal protein S4
- Chain m
- 30S ribosomal protein S12
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