IL_9GHH_158

3D structure

PDB id

9GHH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus FusB bound to the large subunit of the S. aureus 70S ribosome (FusB-Sa70S:LSU)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GG*UCAUC

Length

7 nucleotides

Bulged bases

9GHH|1|a|C|1210, 9GHH|1|a|A|1211

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9GHH_158 not in the Motif Atlas

Homologous match to IL_5J7L_048

Geometric discrepancy: 0.0821

The information below is about IL_5J7L_048

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_95583.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

11

Unit IDs

9GHH|1|a|G|1068
9GHH|1|a|G|1069
*
9GHH|1|a|U|1209
9GHH|1|a|C|1210
9GHH|1|a|A|1211
9GHH|1|a|U|1212
9GHH|1|a|C|1213

Current chains

Chain a

16S rRNA

Nearby chains

Chain d

30S ribosomal protein S3

Chain k

Small ribosomal subunit protein uS10

Chain o

30S ribosomal protein S14 type Z