IL_9GHH_168

3D structure

PDB id

9GHH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus FusB bound to the large subunit of the S. aureus 70S ribosome (FusB-Sa70S:LSU)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CCG*CAAG

Length

7 nucleotides

Bulged bases

9GHH|1|a|C|1410, 9GHH|1|a|A|1514

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9GHH_168 not in the Motif Atlas

Homologous match to IL_5J7L_058

Geometric discrepancy: 0.1052

The information below is about IL_5J7L_058

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61438.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

4

Unit IDs

9GHH|1|a|C|1409
9GHH|1|a|C|1410
9GHH|1|a|G|1411
*
9GHH|1|a|C|1512
9GHH|1|a|A|1513
9GHH|1|a|A|1514
9GHH|1|a|G|1515

Current chains

Chain a

16S rRNA

Nearby chains

Chain F

Transfer RNA; tRNA

Chain b

mRNA

Chain f

30S ribosomal protein S5