IL_9GJ6_010

3D structure

PDB id

9GJ6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human 80S ribosome in complex with NatA in proximal and distal position

Experimental method

ELECTRON MICROSCOPY

Resolution

3.91 Å

Loop

Sequence

GGCG*CCC

Length

7 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9GJ6_010 not in the Motif Atlas

Homologous match to IL_8GLP_030

Geometric discrepancy: 0.3962

The information below is about IL_8GLP_030

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_19025.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

36

Unit IDs

9GJ6|1|1|G|496
9GJ6|1|1|G|497
9GJ6|1|1|C|498
9GJ6|1|1|G|499
*
9GJ6|1|1|C|655
9GJ6|1|1|C|656
9GJ6|1|1|C|657

Current chains

Chain 1

28S rRNA

Nearby chains

Chain LC

60S ribosomal protein L4