IL_9GJ6_018

3D structure

PDB id

9GJ6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human 80S ribosome in complex with NatA in proximal and distal position

Experimental method

ELECTRON MICROSCOPY

Resolution

3.91 Å

Loop

Sequence

UCCU*GUCA

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9GJ6_018 not in the Motif Atlas

Geometric match to IL_9H3G_240

Geometric discrepancy: 0.2055

The information below is about IL_9H3G_240

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_71194.5

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

43

Unit IDs

9GJ6|1|1|U|4885
9GJ6|1|1|C|4886
9GJ6|1|1|C|4887
9GJ6|1|1|U|4888
*
9GJ6|1|1|G|4931
9GJ6|1|1|U|4932
9GJ6|1|1|C|4933
9GJ6|1|1|A|4934

Current chains

Chain 1

28S rRNA

Nearby chains

Chain LE

Large ribosomal subunit protein eL6