IL_9GMO_006
3D structure
- PDB id
- 9GMO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- eIF6-bound pre-60S large ribosomal subunit incorporating mutant uL16
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.59 Å
Loop
- Sequence
- CUCAGUAA*UGAACAG
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9GMO_006 not in the Motif Atlas
- Geometric match to IL_1JBR_001
- Geometric discrepancy: 0.1286
- The information below is about IL_1JBR_001
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_04346.10
- Basepair signature
- cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 15
Unit IDs
9GMO|1|A|C|81
9GMO|1|A|U|82
9GMO|1|A|C|83
9GMO|1|A|A|84
9GMO|1|A|G|85
9GMO|1|A|U|86
9GMO|1|A|A|87
9GMO|1|A|A|88
*
9GMO|1|A|U|96
9GMO|1|A|G|97
9GMO|1|A|A|98
9GMO|1|A|A|99
9GMO|1|A|C|100
9GMO|1|A|A|101
9GMO|1|A|G|102
Current chains
- Chain A
- 28S rRNA
Nearby chains
- Chain K
- 60S ribosomal protein L18
- Chain U
- 60S ribosomal protein L27a
- Chain l
- 60S ribosomal protein L15
- Chain r
- 60S ribosomal protein L13
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