IL_9GMO_024

3D structure

PDB id

9GMO (explore in PDB, NAKB, or RNA 3D Hub)

Description

eIF6-bound pre-60S large ribosomal subunit incorporating mutant uL16

Experimental method

ELECTRON MICROSCOPY

Resolution

2.59 Å

Loop

Sequence

GGUC*GC

Length

6 nucleotides

Bulged bases

9GMO|1|A|G|483, 9GMO|1|A|U|484

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9GMO_024 not in the Motif Atlas

Geometric match to IL_1R3E_001

Geometric discrepancy: 0.2124

The information below is about IL_1R3E_001

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_05670.1

Basepair signature

cWW-cWW

Number of instances in this motif group

9

Unit IDs

9GMO|1|A|G|482
9GMO|1|A|G|483
9GMO|1|A|U|484
9GMO|1|A|C|485
*
9GMO|1|A|G|671
9GMO|1|A|C|672

Current chains

Chain A

28S rRNA

Nearby chains

Chain k

60S ribosomal protein L28