IL_9GMO_033

3D structure

PDB id

9GMO (explore in PDB, NAKB, or RNA 3D Hub)

Description

eIF6-bound pre-60S large ribosomal subunit incorporating mutant uL16

Experimental method

ELECTRON MICROSCOPY

Resolution

2.59 Å

Loop

Sequence

GCG*CCC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9GMO_033 not in the Motif Atlas

Geometric match to IL_4E48_006

Geometric discrepancy: 0.1539

The information below is about IL_4E48_006

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_01003.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

213

Unit IDs

9GMO|1|A|G|740
9GMO|1|A|C|741
9GMO|1|A|G|742
*
9GMO|1|A|C|922
9GMO|1|A|C|923
9GMO|1|A|C|924

Current chains

Chain A

28S rRNA

Nearby chains

Chain s

60S ribosomal protein L14