IL_9GMO_056
3D structure
- PDB id
- 9GMO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- eIF6-bound pre-60S large ribosomal subunit incorporating mutant uL16
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.59 Å
Loop
- Sequence
- G(OMG)G*UAAUC
- Length
- 8 nucleotides
- Bulged bases
- 9GMO|1|A|OMG|1625, 9GMO|1|A|A|1637, 9GMO|1|A|A|1638, 9GMO|1|A|U|1639
- QA status
- Modified nucleotides: OMG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9GMO_056 not in the Motif Atlas
- Homologous match to IL_8C3A_036
- Geometric discrepancy: 0.0809
- The information below is about IL_8C3A_036
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_90991.8
- Basepair signature
- cWW-cWW
- Number of instances in this motif group
- 6
Unit IDs
9GMO|1|A|G|1624
9GMO|1|A|OMG|1625
9GMO|1|A|G|1626
*
9GMO|1|A|U|1636
9GMO|1|A|A|1637
9GMO|1|A|A|1638
9GMO|1|A|U|1639
9GMO|1|A|C|1640
Current chains
- Chain A
- 28S rRNA
Nearby chains
- Chain 0
- Cytoplasmic 60S subunit biogenesis factor ZNF622
- Chain D
- 60S ribosomal protein L8
- Chain J
- 60S ribosomal protein L17
- Chain d
- 60S ribosomal protein L37
- Chain l
- 60S ribosomal protein L15
Coloring options: