IL_9GMO_072

3D structure

PDB id

9GMO (explore in PDB, NAKB, or RNA 3D Hub)

Description

eIF6-bound pre-60S large ribosomal subunit incorporating mutant uL16

Experimental method

ELECTRON MICROSCOPY

Resolution

2.59 Å

Loop

Sequence

GACCCCAGAAAA*UGAAAAUGGAUGGCGC

Length

28 nucleotides

Bulged bases

9GMO|1|A|C|1935, 9GMO|1|A|A|2041, 9GMO|1|A|U|2044, 9GMO|1|A|G|2045

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9GMO_072 not in the Motif Atlas

Homologous match to IL_8P9A_280

Geometric discrepancy: 0.1555

The information below is about IL_8P9A_280

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_34501.1

Basepair signature

cWW-tSH-tHH-L-R-L-R-L-R-L-R-L-R-L-R-L-cWW-L-cWW

Number of instances in this motif group

4

Unit IDs

9GMO|1|A|G|1933
9GMO|1|A|A|1934
9GMO|1|A|C|1935
9GMO|1|A|C|1936
9GMO|1|A|C|1937
9GMO|1|A|C|1938
9GMO|1|A|A|1939
9GMO|1|A|G|1940
9GMO|1|A|A|1941
9GMO|1|A|A|1942
9GMO|1|A|A|1943
9GMO|1|A|A|1944
*
9GMO|1|A|U|2038
9GMO|1|A|G|2039
9GMO|1|A|A|2040
9GMO|1|A|A|2041
9GMO|1|A|A|2042
9GMO|1|A|A|2043
9GMO|1|A|U|2044
9GMO|1|A|G|2045
9GMO|1|A|G|2046
9GMO|1|A|A|2047
9GMO|1|A|U|2048
9GMO|1|A|G|2049
9GMO|1|A|G|2050
9GMO|1|A|C|2051
9GMO|1|A|G|2052
9GMO|1|A|C|2053

Current chains

Chain A

28S rRNA

Nearby chains

Chain B

5S ribosomal RNA; 5S rRNA

Chain E

60S ribosomal protein L3

Chain I

60S ribosomal protein L13a

Chain Z

60S ribosomal protein L35a

Chain g

Ubiquitin-60S ribosomal protein L40

Chain p

Large ribosomal subunit protein uL16