IL_9GMO_079
3D structure
- PDB id
- 9GMO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- eIF6-bound pre-60S large ribosomal subunit incorporating mutant uL16
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.59 Å
Loop
- Sequence
- GUAGU(A2M)(OMG)*CGAAAC
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: A2M, OMG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9GMO_079 not in the Motif Atlas
- Homologous match to IL_8P9A_289
- Geometric discrepancy: 0.1006
- The information below is about IL_8P9A_289
- Detailed Annotation
- 7x6 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_02666.1
- Basepair signature
- cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 17
Unit IDs
9GMO|1|A|G|2358
9GMO|1|A|U|2359
9GMO|1|A|A|2360
9GMO|1|A|G|2361
9GMO|1|A|U|2362
9GMO|1|A|A2M|2363
9GMO|1|A|OMG|2364
*
9GMO|1|A|C|3858
9GMO|1|A|G|3859
9GMO|1|A|A|3860
9GMO|1|A|A|3861
9GMO|1|A|A|3862
9GMO|1|A|C|3863
Current chains
- Chain A
- 28S rRNA
Nearby chains
- Chain 0
- Cytoplasmic 60S subunit biogenesis factor ZNF622
- Chain F
- 60S ribosomal protein L4
- Chain J
- 60S ribosomal protein L17
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