IL_9GMO_096

3D structure

PDB id

9GMO (explore in PDB, NAKB, or RNA 3D Hub)

Description

eIF6-bound pre-60S large ribosomal subunit incorporating mutant uL16

Experimental method

ELECTRON MICROSCOPY

Resolution

2.59 Å

Loop

Sequence

AGUCGG*CUGU

Length

10 nucleotides

Bulged bases

9GMO|1|A|G|3839

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9GMO_096 not in the Motif Atlas

Homologous match to IL_8C3A_083

Geometric discrepancy: 0.1156

The information below is about IL_8C3A_083

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_06455.1

Basepair signature

cWW-L-R-L-cWW-L-L

Number of instances in this motif group

7

Unit IDs

9GMO|1|A|A|2850
9GMO|1|A|G|2851
9GMO|1|A|U|2852
9GMO|1|A|C|2853
9GMO|1|A|G|2854
9GMO|1|A|G|2855
*
9GMO|1|A|C|3837
9GMO|1|A|U|3838
9GMO|1|A|G|3839
9GMO|1|A|U|3840

Current chains

Chain A

28S rRNA

Nearby chains

Chain E

60S ribosomal protein L3

Chain P

60S ribosomal protein L23