IL_9GMO_097

3D structure

PDB id

9GMO (explore in PDB, NAKB, or RNA 3D Hub)

Description

eIF6-bound pre-60S large ribosomal subunit incorporating mutant uL16

Experimental method

ELECTRON MICROSCOPY

Resolution

2.59 Å

Loop

Sequence

CGUAAC*GGAUAAG

Length

13 nucleotides

Bulged bases

9GMO|1|A|U|2880

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9GMO_097 not in the Motif Atlas

Homologous match to IL_8C3A_084

Geometric discrepancy: 0.0832

The information below is about IL_8C3A_084

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65969.4

Basepair signature

cWW-tSH-L-R-tHH-tHS-cWW

Number of instances in this motif group

7

Unit IDs

9GMO|1|A|C|2867
9GMO|1|A|G|2868
9GMO|1|A|U|2869
9GMO|1|A|A|2870
9GMO|1|A|A|2871
9GMO|1|A|C|2872
*
9GMO|1|A|G|2877
9GMO|1|A|G|2878
9GMO|1|A|A|2879
9GMO|1|A|U|2880
9GMO|1|A|A|2881
9GMO|1|A|A|2882
9GMO|1|A|G|2883

Current chains

Chain A

28S rRNA

Nearby chains

Chain j

60S ribosomal protein L37a