IL_9GMO_107

3D structure

PDB id

9GMO (explore in PDB, NAKB, or RNA 3D Hub)

Description

eIF6-bound pre-60S large ribosomal subunit incorporating mutant uL16

Experimental method

ELECTRON MICROSCOPY

Resolution

2.59 Å

Loop

Sequence

C(5MC)AA(A2M)UGCCUC(OMG)*(OMC)GCG

Length

16 nucleotides

Bulged bases

9GMO|1|A|A2M|3785, 9GMO|1|A|C|3791, 9GMO|1|A|C|3810

QA status

Modified nucleotides: 5MC, A2M, OMG, OMC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9GMO_107 not in the Motif Atlas

Homologous match to IL_8C3A_095

Geometric discrepancy: 0.1041

The information below is about IL_8C3A_095

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_66080.1

Basepair signature

cWW-cWW-tSH-L-cWW-L

Number of instances in this motif group

5

Unit IDs

9GMO|1|A|C|3781
9GMO|1|A|5MC|3782
9GMO|1|A|A|3783
9GMO|1|A|A|3784
9GMO|1|A|A2M|3785
9GMO|1|A|U|3786
9GMO|1|A|G|3787
9GMO|1|A|C|3788
9GMO|1|A|C|3789
9GMO|1|A|U|3790
9GMO|1|A|C|3791
9GMO|1|A|OMG|3792
*
9GMO|1|A|OMC|3808
9GMO|1|A|G|3809
9GMO|1|A|C|3810
9GMO|1|A|G|3811

Current chains

Chain A

28S rRNA

Nearby chains