IL_9GMO_123
3D structure
- PDB id
- 9GMO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- eIF6-bound pre-60S large ribosomal subunit incorporating mutant uL16
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.59 Å
Loop
- Sequence
- (OMC)(PSU)C*G(PSU)G(A2M)G
- Length
- 8 nucleotides
- Bulged bases
- 9GMO|1|A|G|4522, 9GMO|1|A|A2M|4523
- QA status
- Modified nucleotides: OMC, PSU, A2M
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9GMO_123 not in the Motif Atlas
- Homologous match to IL_8C3A_116
- Geometric discrepancy: 0.074
- The information below is about IL_8C3A_116
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_54650.3
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 16
Unit IDs
9GMO|1|A|OMC|4456
9GMO|1|A|PSU|4457
9GMO|1|A|C|4458
*
9GMO|1|A|G|4520
9GMO|1|A|PSU|4521
9GMO|1|A|G|4522
9GMO|1|A|A2M|4523
9GMO|1|A|G|4524
Current chains
- Chain A
- 28S rRNA
Nearby chains
- Chain 0
- Cytoplasmic 60S subunit biogenesis factor ZNF622
- Chain E
- 60S ribosomal protein L3
- Chain P
- 60S ribosomal protein L23
Coloring options: