IL_9GMO_135
3D structure
- PDB id
- 9GMO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- eIF6-bound pre-60S large ribosomal subunit incorporating mutant uL16
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.59 Å
Loop
- Sequence
- UGUAU(OMG)*CGAAG
- Length
- 11 nucleotides
- Bulged bases
- 9GMO|1|A|U|4634, 9GMO|1|A|U|4636
- QA status
- Modified nucleotides: OMG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9GMO_135 not in the Motif Atlas
- Homologous match to IL_8P9A_346
- Geometric discrepancy: 0.2216
- The information below is about IL_8P9A_346
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_98200.1
- Basepair signature
- cWW-L-R-tHW-L-cWW
- Number of instances in this motif group
- 3
Unit IDs
9GMO|1|A|U|4632
9GMO|1|A|G|4633
9GMO|1|A|U|4634
9GMO|1|A|A|4635
9GMO|1|A|U|4636
9GMO|1|A|OMG|4637
*
9GMO|1|A|C|4662
9GMO|1|A|G|4663
9GMO|1|A|A|4664
9GMO|1|A|A|4665
9GMO|1|A|G|4666
Current chains
- Chain A
- 28S rRNA
Nearby chains
- Chain E
- 60S ribosomal protein L3
- Chain Q
- 60S ribosomal protein L24
- Chain X
- 60S ribosomal protein L31
Coloring options: