IL_9GMO_152

3D structure

PDB id

9GMO (explore in PDB, NAKB, or RNA 3D Hub)

Description

eIF6-bound pre-60S large ribosomal subunit incorporating mutant uL16

Experimental method

ELECTRON MICROSCOPY

Resolution

2.59 Å

Loop

Sequence

AGAG*CGAU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9GMO_152 not in the Motif Atlas

Homologous match to IL_8C3A_141

Geometric discrepancy: 0.2951

The information below is about IL_8C3A_141

Detailed Annotation

Double sheared; A in syn

Broad Annotation

Double sheared

Motif group

IL_09705.12

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

35

Unit IDs

9GMO|1|A|A|5014
9GMO|1|A|G|5015
9GMO|1|A|A|5016
9GMO|1|A|G|5017
*
9GMO|1|A|C|5032
9GMO|1|A|G|5033
9GMO|1|A|A|5034
9GMO|1|A|U|5035

Current chains

Chain A

28S rRNA

Nearby chains

Chain L

60S ribosomal protein L19