IL_9GR1_134
3D structure
- PDB id
- 9GR1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli 70S-TEC complex in delivery state
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.17 Å
Loop
- Sequence
- UGCAAAC*GGACGUAUA
- Length
- 16 nucleotides
- Bulged bases
- 9GR1|1|a|A|1803, 9GR1|1|a|C|1818, 9GR1|1|a|U|1822
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_9GR1_134 not in the Motif Atlas
- Homologous match to IL_5J7L_313
- Geometric discrepancy: 0.0475
- The information below is about IL_5J7L_313
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_17069.5
- Basepair signature
- cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW
- Number of instances in this motif group
- 5
Unit IDs
9GR1|1|a|U|1800
9GR1|1|a|G|1801
9GR1|1|a|C|1802
9GR1|1|a|A|1803
9GR1|1|a|A|1804
9GR1|1|a|A|1805
9GR1|1|a|C|1806
*
9GR1|1|a|G|1815
9GR1|1|a|G|1816
9GR1|1|a|A|1817
9GR1|1|a|C|1818
9GR1|1|a|G|1819
9GR1|1|a|U|1820
9GR1|1|a|A|1821
9GR1|1|a|U|1822
9GR1|1|a|A|1823
Current chains
- Chain a
- 23S ribosomal RNA
Nearby chains
- Chain A
- Small subunit ribosomal RNA; SSU rRNA
- Chain c
- 50S ribosomal protein L2
Coloring options: