IL_9GUL_114

3D structure

PDB id

9GUL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of FLuc-XBP1u+ stalled human 60S ribosome nascent chain complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

CUG*CG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9GUL_114 not in the Motif Atlas

Geometric match to IL_6CF2_002

Geometric discrepancy: 0.149

The information below is about IL_6CF2_002

Detailed Annotation

Major groove intercalation

Broad Annotation

Major groove intercalation

Motif group

IL_77710.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

27

Unit IDs

9GUL|1|L5|C|3708
9GUL|1|L5|U|3709
9GUL|1|L5|G|3710
*
9GUL|1|L5|C|3741
9GUL|1|L5|G|3742

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LA

60S ribosomal protein L8