IL_9GUL_123

3D structure

PDB id

9GUL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of FLuc-XBP1u+ stalled human 60S ribosome nascent chain complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

GA*UACC

Length

6 nucleotides

Bulged bases

9GUL|1|L5|A|4385

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9GUL_123 not in the Motif Atlas

Homologous match to IL_8GLP_131

Geometric discrepancy: 0.087

The information below is about IL_8GLP_131

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_37129.1

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

57

Unit IDs

9GUL|1|L5|G|3916
9GUL|1|L5|A|3917
*
9GUL|1|L5|U|4384
9GUL|1|L5|A|4385
9GUL|1|L5|C|4386
9GUL|1|L5|C|4387

Current chains

Chain L5

28S rRNA

Nearby chains

Chain 1

Stalled NC

Chain 2

P-tRNA CCA tail

Chain LA

60S ribosomal protein L8