IL_9GUL_145

3D structure

PDB id

9GUL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of FLuc-XBP1u+ stalled human 60S ribosome nascent chain complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

ACAU(PSU)U*AC(B8T)AU

Length

11 nucleotides

Bulged bases

9GUL|1|L5|C|4670, 9GUL|1|L5|B8T|4671

QA status

Modified nucleotides: PSU, B8T

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9GUL_145 not in the Motif Atlas

Homologous match to IL_8GLP_317

Geometric discrepancy: 0.2951

The information below is about IL_8GLP_317

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_31690.2

Basepair signature

cWW-L-cWW-L-cWW-L

Number of instances in this motif group

7

Unit IDs

9GUL|1|L5|A|4624
9GUL|1|L5|C|4625
9GUL|1|L5|A|4626
9GUL|1|L5|U|4627
9GUL|1|L5|PSU|4628
9GUL|1|L5|U|4629
*
9GUL|1|L5|A|4669
9GUL|1|L5|C|4670
9GUL|1|L5|B8T|4671
9GUL|1|L5|A|4672
9GUL|1|L5|U|4673

Current chains

Chain L5

28S rRNA

Nearby chains

Chain LB

60S ribosomal protein L3

Chain LV

60S ribosomal protein L23

Chain LW

60S ribosomal protein L24