3D structure

PDB id
9GUQ (explore in PDB, NAKB, or RNA 3D Hub)
Description
30S PIC (Pre-Initiation complex)
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
UGUAG*CGUAGAGA
Length
13 nucleotides
Bulged bases
9GUQ|1|A|A|702
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_9GUQ_035 not in the Motif Atlas
Homologous match to IL_5J7L_035
Geometric discrepancy: 0.1332
The information below is about IL_5J7L_035
Detailed Annotation
Kink-turn
Broad Annotation
No text annotation
Motif group
IL_01488.3
Basepair signature
cWW-tSS-tSH-L-R-tHS-L-cWW
Number of instances in this motif group
10

Unit IDs

9GUQ|1|A|U|684
9GUQ|1|A|G|685
9GUQ|1|A|U|686
9GUQ|1|A|A|687
9GUQ|1|A|G|688
*
9GUQ|1|A|C|699
9GUQ|1|A|G|700
9GUQ|1|A|U|701
9GUQ|1|A|A|702
9GUQ|1|A|G|703
9GUQ|1|A|A|704
9GUQ|1|A|G|705
9GUQ|1|A|A|706

Current chains

Chain A
16S ribosomal RNA

Nearby chains

Chain L
30S ribosomal protein S11

Coloring options:


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