3D structure

PDB id
9GUT (explore in PDB, NAKB, or RNA 3D Hub)
Description
30S mRNA delivery complex (bS1 resolved)
Experimental method
ELECTRON MICROSCOPY
Resolution
2.8 Å

Loop

Sequence
UGAAAUCC*GAACUG
Length
14 nucleotides
Bulged bases
9GUT|1|A|U|632
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_9GUT_030 not in the Motif Atlas
Homologous match to IL_5J7L_030
Geometric discrepancy: 0.0958
The information below is about IL_5J7L_030
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_78349.3
Basepair signature
cWW-L-R-L-R-L-R-L-cWW-L-L
Number of instances in this motif group
2

Unit IDs

9GUT|1|A|U|605
9GUT|1|A|G|606
9GUT|1|A|A|607
9GUT|1|A|A|608
9GUT|1|A|A|609
9GUT|1|A|U|610
9GUT|1|A|C|611
9GUT|1|A|C|612
*
9GUT|1|A|G|628
9GUT|1|A|A|629
9GUT|1|A|A|630
9GUT|1|A|C|631
9GUT|1|A|U|632
9GUT|1|A|G|633

Current chains

Chain A
16S ribosomal RNA

Nearby chains

Chain E
Small ribosomal subunit protein uS4
Chain I
30S ribosomal protein S8
Chain Q
30S ribosomal protein S16
Chain R
30S ribosomal protein S17

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.5047 s