3D structure

PDB id
9GUT (explore in PDB, NAKB, or RNA 3D Hub)
Description
30S mRNA delivery complex (bS1 resolved)
Experimental method
ELECTRON MICROSCOPY
Resolution
2.8 Å

Loop

Sequence
UGUAG*CGUAGAGA
Length
13 nucleotides
Bulged bases
9GUT|1|A|A|702
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_9GUT_035 not in the Motif Atlas
Homologous match to IL_5J7L_035
Geometric discrepancy: 0.0957
The information below is about IL_5J7L_035
Detailed Annotation
Kink-turn
Broad Annotation
No text annotation
Motif group
IL_01488.3
Basepair signature
cWW-tSS-tSH-L-R-tHS-L-cWW
Number of instances in this motif group
10

Unit IDs

9GUT|1|A|U|684
9GUT|1|A|G|685
9GUT|1|A|U|686
9GUT|1|A|A|687
9GUT|1|A|G|688
*
9GUT|1|A|C|699
9GUT|1|A|G|700
9GUT|1|A|U|701
9GUT|1|A|A|702
9GUT|1|A|G|703
9GUT|1|A|A|704
9GUT|1|A|G|705
9GUT|1|A|A|706

Current chains

Chain A
16S ribosomal RNA

Nearby chains

Chain L
30S ribosomal protein S11

Coloring options:


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