IL_9GUU_062

3D structure

PDB id

9GUU (explore in PDB, NAKB, or RNA 3D Hub)

Description

30S mRNA delivery complex (consensus)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

GGUU*GAUU

Length

8 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9GUU_062 not in the Motif Atlas

Geometric match to IL_1D4R_003

Geometric discrepancy: 0.1736

The information below is about IL_1D4R_003

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

39

Unit IDs

9GUU|1|A|G|1422
9GUU|1|A|G|1423
9GUU|1|A|U|1424
9GUU|1|A|U|1425
*
9GUU|1|A|G|1475
9GUU|1|A|A|1476
9GUU|1|A|U|1477
9GUU|1|A|U|1478

Current chains

Chain A

16S ribosomal RNA

Nearby chains