IL_9GXX_100

3D structure

PDB id

9GXX (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome with doublet-decoding tRNASer3 bound to A-site GCA codon

Experimental method

ELECTRON MICROSCOPY

Resolution

2.61 Å

Loop

Sequence

UUAAGUG*CUAAA

Length

12 nucleotides

Bulged bases

9GXX|1|a|A|1143

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9GXX_100 not in the Motif Atlas

Homologous match to IL_5J7L_280

Geometric discrepancy: 0.0579

The information below is about IL_5J7L_280

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_57188.5

Basepair signature

cWW-tWW-L-tWW-cWW-cSH

Number of instances in this motif group

5

Unit IDs

9GXX|1|a|U|1018
9GXX|1|a|U|1019
9GXX|1|a|A|1020
9GXX|1|a|A|1021
9GXX|1|a|G|1022
9GXX|1|a|U|1023
9GXX|1|a|G|1024
*
9GXX|1|a|C|1140
9GXX|1|a|U|1141
9GXX|1|a|A|1142
9GXX|1|a|A|1143
9GXX|1|a|A|1144

Current chains

Chain a

23S rRNA

Nearby chains

Chain 3

Large ribosomal subunit protein bL36A

Chain i

Large ribosomal subunit protein uL13