IL_9GXX_132

3D structure

PDB id

9GXX (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome with doublet-decoding tRNASer3 bound to A-site GCA codon

Experimental method

ELECTRON MICROSCOPY

Resolution

2.61 Å

Loop

Sequence

UGCAAAC*GGACGUAUA

Length

16 nucleotides

Bulged bases

9GXX|1|a|A|1801, 9GXX|1|a|C|1816, 9GXX|1|a|U|1820

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_9GXX_132 not in the Motif Atlas

Homologous match to IL_5J7L_313

Geometric discrepancy: 0.0565

The information below is about IL_5J7L_313

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.5

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

9GXX|1|a|U|1798
9GXX|1|a|G|1799
9GXX|1|a|C|1800
9GXX|1|a|A|1801
9GXX|1|a|A|1802
9GXX|1|a|A|1803
9GXX|1|a|C|1804
*
9GXX|1|a|G|1813
9GXX|1|a|G|1814
9GXX|1|a|A|1815
9GXX|1|a|C|1816
9GXX|1|a|G|1817
9GXX|1|a|U|1818
9GXX|1|a|A|1819
9GXX|1|a|U|1820
9GXX|1|a|A|1821

Current chains

Chain a

23S rRNA

Nearby chains

Chain A

Small subunit ribosomal RNA; SSU rRNA

Chain c

Large ribosomal subunit protein uL2